CellGPU  0.8.0
GPU-accelerated simulations of cells
VertexQuadraticEnergy Member List

This is the complete list of members for VertexQuadraticEnergy, including all inherited members.

AreaPeriSimple2DCellprotected
AreaPeriPreferencesSimple2DCellprotected
AVMDatabaseNetCDF (defined in VertexQuadraticEnergy)VertexQuadraticEnergyfriend
BoxSimple2DCell
cellDeath(int cellIndex)vertexModelBasevirtual
cellDirectorForcesSimple2DActiveCell
cellDirectorsSimple2DActiveCell
cellDivision(const vector< int > &parameters, const vector< Dscalar > &dParams={})vertexModelBasevirtual
cellEdgeFlipsvertexModelBaseprotected
cellForcesSimple2DCell
cellMassesSimple2DCell
cellNeighborNumSimple2DCell
cellNeighborsSimple2DCell
cellPositionsSimple2DCell
cellSetsvertexModelBaseprotected
cellTypeSimple2DCell
cellTypeIndexerSimple2DCell
cellVelocitiesSimple2DCell
cellVertexNumSimple2DCell
cellVerticesSimple2DCellprotected
computeEnergy()VertexQuadraticEnergyvirtual
computeForces()VertexQuadraticEnergyvirtual
computeForcesCPU()VertexQuadraticEnergy
computeForcesGPU()VertexQuadraticEnergy
computeGeometry()Simple2DCellvirtual
computeGeometryCPU()vertexModelBasevirtual
computeGeometryGPU()vertexModelBasevirtual
computeKineticEnergy()Simple2DCell
computeKineticPressure()Simple2DCell
currentTimeSimple2DModel
deltaTSimple2DCell
displacementsSimple2DCellprotected
DrSimple2DActiveCell
EnergySimple2DCell
enforceTopology()vertexModelBasevirtual
finishedFlippingEdgesvertexModelBaseprotected
flipEdgesGPU()vertexModelBaseprotected
forcesUpToDateSimple2DCell
getCellCentroids()vertexModelBase
getCellCentroidsCPU()vertexModelBase
getCellCentroidsGPU()vertexModelBase
getCellNeighs(int idx, int &nNeighs, vector< int > &neighs) (defined in Simple2DCell)Simple2DCellinline
getCellPositions()vertexModelBase
getCellPositionsCPU()vertexModelBase
getCellPositionsGPU()vertexModelBase
getCellVertexSetForT1(int v1, int v2, int4 &cellSet, int4 &vertexSet, bool &growList)vertexModelBaseprotected
getDynMatEntries(vector< int2 > &rcs, vector< Dscalar > &vals, Dscalar unstress=1.0, Dscalar stress=1.0)Simple2DModelinlinevirtual
getForces(GPUArray< Dscalar2 > &forces)vertexModelBaseinlinevirtual
getMaxForce()Simple2DCellinlinevirtual
getNumberOfDegreesOfFreedom()vertexModelBaseinlinevirtual
GPUcomputeSimple2DCellprotected
growCellVertexListAssistvertexModelBaseprotected
growCellVerticesList(int newVertexMax)vertexModelBaseprotected
idxToTagSimple2DCellprotected
idxToTagVertexSimple2DCellprotected
initializeCellSorting()Simple2DCellprotected
initializeEdgeFlipLists()vertexModelBaseprotected
initializeSimple2DActiveCell(int n)Simple2DActiveCell
initializeSimple2DCell(int n)Simple2DCell
initializeVertexModelBase(int n, bool spvInitialize=false)vertexModelBase
initializeVertexSorting()Simple2DCellprotected
ittSimple2DCellprotected
ittVertexSimple2DCellprotected
KASimple2DCellprotected
KineticEnergySimple2DCell
KPSimple2DCellprotected
ModuliSimple2DCellprotected
MotilitySimple2DActiveCell
moveDegreesOfFreedom(GPUArray< Dscalar2 > &displacements, Dscalar scale=1.)vertexModelBasevirtual
n_idxSimple2DCell
NcellsSimple2DCell
noiseSimple2DCellprotected
NverticesSimple2DCell
reIndexCellArray(GPUArray< int > &array)Simple2DCellprotected
reIndexCellArray(GPUArray< Dscalar > &array)Simple2DCellprotected
reIndexCellArray(GPUArray< Dscalar2 > &array)Simple2DCellprotected
reIndexVertexArray(GPUArray< int > &array)Simple2DCellprotected
reIndexVertexArray(GPUArray< Dscalar > &array)Simple2DCellprotected
reIndexVertexArray(GPUArray< Dscalar2 > &array)Simple2DCellprotected
reportAP(bool verbose=false)Simple2DCellinline
reportMeanCellForce(bool verbose)Simple2DCellvirtual
reportMeanP()Simple2DCell
reportMeanVertexForce(bool verbose=false)Simple2DCellinline
reportNeighborsCell(int i)vertexModelBaseinline
reportq()Simple2DCellvirtual
reportVarAP()Simple2DCell
reportVarq()Simple2DCell
ReproducibleSimple2DCellprotected
returnAreaPeri()Simple2DCellinlinevirtual
returnAreaPeriPreferences()Simple2DCellinlinevirtual
returnBox()Simple2DCellinlinevirtual
returnForces()vertexModelBaseinlinevirtual
returnItt()Simple2DCellinlinevirtual
returnMasses()vertexModelBaseinlinevirtual
returnModuli()Simple2DCellinlinevirtual
returnOtherData()Simple2DCellinlinevirtual
returnPositions()vertexModelBaseinlinevirtual
returnVelocities()vertexModelBaseinlinevirtual
setBox(BoxPtr _box)Simple2DCellinline
setCellDirectorsRandomly()Simple2DActiveCell
setCellMotility(vector< Dscalar > &v0s, vector< Dscalar > &drs)Simple2DActiveCell
setCellPositions(vector< Dscalar2 > newCellPositions)Simple2DCell
setCellPositionsRandomly()Simple2DCell
setCellPreferences(vector< Dscalar2 > &AreaPeriPreferences)Simple2DCell
setCellPreferencesUniform(Dscalar A0, Dscalar P0)Simple2DCell
setCellsVoronoiTesselation(bool spvInitialize=false)vertexModelBase
setCellType(vector< int > &types)Simple2DCell
setCellTypeUniform(int i)Simple2DCell
setCellVelocitiesMaxwellBoltzmann(Dscalar T)Simple2DCell
setCPU(bool global=true)vertexModelBaseinlinevirtual
Simple2DActiveCell::setCPU()Simple2DCellinlinevirtual
setDeltaT(Dscalar dt)Simple2DCellinline
setGPU()Simple2DCellinlinevirtual
setModuliUniform(Dscalar newKA, Dscalar newKP)Simple2DCell
setT1Threshold(Dscalar t1t)vertexModelBaseinlinevirtual
setTime(Dscalar time)Simple2DModelinlinevirtual
setv0Dr(Dscalar v0new, Dscalar drnew)Simple2DActiveCellvirtual
setVertexPositions(vector< Dscalar2 > newVertexPositions)Simple2DCell
setVertexTopologyFromCells(vector< vector< int > > cellVertexIndices)Simple2DCell
setVertexVelocitiesMaxwellBoltzmann(Dscalar T)Simple2DCell
Simple2DActiveCell()Simple2DActiveCell
Simple2DCell()Simple2DCell
spatiallySortCells()Simple2DCellprotected
spatiallySortCellsAndCellActivity()Simple2DActiveCellprotected
spatiallySortVertices()Simple2DCellprotected
spatiallySortVerticesAndCellActivity()Simple2DActiveCellprotected
spatialSorting()vertexModelBasevirtual
T1ThresholdvertexModelBase
tagToIdxSimple2DCell
tagToIdxVertexSimple2DCell
testAndPerformT1TransitionsCPU()vertexModelBase
testAndPerformT1TransitionsGPU()vertexModelBase
testEdgesForT1GPU()vertexModelBaseprotected
TimestepSimple2DCell
ttiSimple2DCellprotected
ttiVertexSimple2DCellprotected
v0Simple2DActiveCell
vertexCellNeighborsSimple2DCell
vertexEdgeFlipsvertexModelBase
vertexEdgeFlipsCurrentvertexModelBase
vertexForcesSimple2DCell
vertexForceSetsvertexModelBase
vertexMassesSimple2DCell
vertexMaxSimple2DCellprotected
vertexNeighborsSimple2DCell
vertexPositionsSimple2DCell
VertexQuadraticEnergy(int n, Dscalar A0, Dscalar P0, bool reprod=false, bool runSPVToInitialize=false)VertexQuadraticEnergy
vertexVelocitiesSimple2DCell
vicsekOrderParameter(Dscalar2 &vParallel, Dscalar2 &vPerpendicular)Simple2DActiveCellinline
vicsekOrderParameterDirector(Dscalar2 &vParallel, Dscalar2 &vPerpendicular)Simple2DActiveCellinline
voroCurSimple2DCellprotected
voroLastNextSimple2DCellprotected
Generated on Tue Sep 17 2019 09:19:15 for CellGPU by   doxygen 1.8.13