CellGPU  0.8.0
GPU-accelerated simulations of cells
VertexQuadraticEnergyWithTension Member List

This is the complete list of members for VertexQuadraticEnergyWithTension, including all inherited members.

AreaPeriSimple2DCellprotected
AreaPeriPreferencesSimple2DCellprotected
AVMDatabaseNetCDF (defined in VertexQuadraticEnergyWithTension)VertexQuadraticEnergyWithTensionfriend
BoxSimple2DCell
cellDeath(int cellIndex)vertexModelBasevirtual
cellDirectorForcesSimple2DActiveCell
cellDirectorsSimple2DActiveCell
cellDivision(const vector< int > &parameters, const vector< Dscalar > &dParams={})vertexModelBasevirtual
cellEdgeFlipsvertexModelBaseprotected
cellForcesSimple2DCell
cellMassesSimple2DCell
cellNeighborNumSimple2DCell
cellNeighborsSimple2DCell
cellPositionsSimple2DCell
cellSetsvertexModelBaseprotected
cellTypeSimple2DCell
cellTypeIndexerSimple2DCell
cellVelocitiesSimple2DCell
cellVertexNumSimple2DCell
cellVerticesSimple2DCellprotected
computeEnergy()VertexQuadraticEnergyWithTensionvirtual
computeForces()VertexQuadraticEnergyWithTensionvirtual
computeForcesCPU()VertexQuadraticEnergy
computeForcesGPU()VertexQuadraticEnergy
computeGeometry()Simple2DCellvirtual
computeGeometryCPU()vertexModelBasevirtual
computeGeometryGPU()vertexModelBasevirtual
computeKineticEnergy()Simple2DCell
computeKineticPressure()Simple2DCell
computeVertexSimpleTensionForceGPU()VertexQuadraticEnergyWithTensionvirtual
computeVertexTensionForceGPU()VertexQuadraticEnergyWithTensionvirtual
computeVertexTensionForcesCPU()VertexQuadraticEnergyWithTensionvirtual
currentTimeSimple2DModel
deltaTSimple2DCell
displacementsSimple2DCellprotected
DrSimple2DActiveCell
EnergySimple2DCell
enforceTopology()vertexModelBasevirtual
finishedFlippingEdgesvertexModelBaseprotected
flipEdgesGPU()vertexModelBaseprotected
forcesUpToDateSimple2DCell
gammaVertexQuadraticEnergyWithTensionprotected
getCellCentroids()vertexModelBase
getCellCentroidsCPU()vertexModelBase
getCellCentroidsGPU()vertexModelBase
getCellNeighs(int idx, int &nNeighs, vector< int > &neighs) (defined in Simple2DCell)Simple2DCellinline
getCellPositions()vertexModelBase
getCellPositionsCPU()vertexModelBase
getCellPositionsGPU()vertexModelBase
getCellVertexSetForT1(int v1, int v2, int4 &cellSet, int4 &vertexSet, bool &growList)vertexModelBaseprotected
getDynMatEntries(vector< int2 > &rcs, vector< Dscalar > &vals, Dscalar unstress=1.0, Dscalar stress=1.0)Simple2DModelinlinevirtual
getForces(GPUArray< Dscalar2 > &forces)vertexModelBaseinlinevirtual
getMaxForce()Simple2DCellinlinevirtual
getNumberOfDegreesOfFreedom()vertexModelBaseinlinevirtual
getSurfaceTension()VertexQuadraticEnergyWithTensioninline
GPUcomputeSimple2DCellprotected
growCellVertexListAssistvertexModelBaseprotected
growCellVerticesList(int newVertexMax)vertexModelBaseprotected
idxToTagSimple2DCellprotected
idxToTagVertexSimple2DCellprotected
initializeCellSorting()Simple2DCellprotected
initializeEdgeFlipLists()vertexModelBaseprotected
initializeSimple2DActiveCell(int n)Simple2DActiveCell
initializeSimple2DCell(int n)Simple2DCell
initializeVertexModelBase(int n, bool spvInitialize=false)vertexModelBase
initializeVertexSorting()Simple2DCellprotected
ittSimple2DCellprotected
ittVertexSimple2DCellprotected
KASimple2DCellprotected
KineticEnergySimple2DCell
KPSimple2DCellprotected
ModuliSimple2DCellprotected
MotilitySimple2DActiveCell
moveDegreesOfFreedom(GPUArray< Dscalar2 > &displacements, Dscalar scale=1.)vertexModelBasevirtual
n_idxSimple2DCell
NcellsSimple2DCell
noiseSimple2DCellprotected
NverticesSimple2DCell
reIndexCellArray(GPUArray< int > &array)Simple2DCellprotected
reIndexCellArray(GPUArray< Dscalar > &array)Simple2DCellprotected
reIndexCellArray(GPUArray< Dscalar2 > &array)Simple2DCellprotected
reIndexVertexArray(GPUArray< int > &array)Simple2DCellprotected
reIndexVertexArray(GPUArray< Dscalar > &array)Simple2DCellprotected
reIndexVertexArray(GPUArray< Dscalar2 > &array)Simple2DCellprotected
reportAP(bool verbose=false)Simple2DCellinline
reportMeanCellForce(bool verbose)Simple2DCellvirtual
reportMeanP()Simple2DCell
reportMeanVertexForce(bool verbose=false)Simple2DCellinline
reportNeighborsCell(int i)vertexModelBaseinline
reportq()Simple2DCellvirtual
reportVarAP()Simple2DCell
reportVarq()Simple2DCell
ReproducibleSimple2DCellprotected
returnAreaPeri()Simple2DCellinlinevirtual
returnAreaPeriPreferences()Simple2DCellinlinevirtual
returnBox()Simple2DCellinlinevirtual
returnForces()vertexModelBaseinlinevirtual
returnItt()Simple2DCellinlinevirtual
returnMasses()vertexModelBaseinlinevirtual
returnModuli()Simple2DCellinlinevirtual
returnOtherData()Simple2DCellinlinevirtual
returnPositions()vertexModelBaseinlinevirtual
returnVelocities()vertexModelBaseinlinevirtual
setBox(BoxPtr _box)Simple2DCellinline
setCellDirectorsRandomly()Simple2DActiveCell
setCellMotility(vector< Dscalar > &v0s, vector< Dscalar > &drs)Simple2DActiveCell
setCellPositions(vector< Dscalar2 > newCellPositions)Simple2DCell
setCellPositionsRandomly()Simple2DCell
setCellPreferences(vector< Dscalar2 > &AreaPeriPreferences)Simple2DCell
setCellPreferencesUniform(Dscalar A0, Dscalar P0)Simple2DCell
setCellsVoronoiTesselation(bool spvInitialize=false)vertexModelBase
setCellType(vector< int > &types)Simple2DCell
setCellTypeUniform(int i)Simple2DCell
setCellVelocitiesMaxwellBoltzmann(Dscalar T)Simple2DCell
setCPU(bool global=true)vertexModelBaseinlinevirtual
Simple2DActiveCell::setCPU()Simple2DCellinlinevirtual
setDeltaT(Dscalar dt)Simple2DCellinline
setGPU()Simple2DCellinlinevirtual
setModuliUniform(Dscalar newKA, Dscalar newKP)Simple2DCell
setSurfaceTension(Dscalar g)VertexQuadraticEnergyWithTensioninline
setSurfaceTension(vector< Dscalar > gammas)VertexQuadraticEnergyWithTension
setT1Threshold(Dscalar t1t)vertexModelBaseinlinevirtual
setTime(Dscalar time)Simple2DModelinlinevirtual
setUseSurfaceTension(bool use_tension)VertexQuadraticEnergyWithTensioninline
setv0Dr(Dscalar v0new, Dscalar drnew)Simple2DActiveCellvirtual
setVertexPositions(vector< Dscalar2 > newVertexPositions)Simple2DCell
setVertexTopologyFromCells(vector< vector< int > > cellVertexIndices)Simple2DCell
setVertexVelocitiesMaxwellBoltzmann(Dscalar T)Simple2DCell
Simple2DActiveCell()Simple2DActiveCell
Simple2DCell()Simple2DCell
simpleTensionVertexQuadraticEnergyWithTensionprotected
spatiallySortCells()Simple2DCellprotected
spatiallySortCellsAndCellActivity()Simple2DActiveCellprotected
spatiallySortVertices()Simple2DCellprotected
spatiallySortVerticesAndCellActivity()Simple2DActiveCellprotected
spatialSorting()vertexModelBasevirtual
T1ThresholdvertexModelBase
tagToIdxSimple2DCell
tagToIdxVertexSimple2DCell
TensionVertexQuadraticEnergyWithTensionprotected
tensionMatrixVertexQuadraticEnergyWithTensionprotected
testAndPerformT1TransitionsCPU()vertexModelBase
testAndPerformT1TransitionsGPU()vertexModelBase
testEdgesForT1GPU()vertexModelBaseprotected
TimestepSimple2DCell
ttiSimple2DCellprotected
ttiVertexSimple2DCellprotected
v0Simple2DActiveCell
vertexCellNeighborsSimple2DCell
vertexEdgeFlipsvertexModelBase
vertexEdgeFlipsCurrentvertexModelBase
vertexForcesSimple2DCell
vertexForceSetsvertexModelBase
vertexMassesSimple2DCell
vertexMaxSimple2DCellprotected
vertexNeighborsSimple2DCell
vertexPositionsSimple2DCell
VertexQuadraticEnergy(int n, Dscalar A0, Dscalar P0, bool reprod=false, bool runSPVToInitialize=false)VertexQuadraticEnergy
VertexQuadraticEnergyWithTension(int n, Dscalar A0, Dscalar P0, bool reprod=false, bool runSPVToInitialize=false)VertexQuadraticEnergyWithTensioninline
vertexVelocitiesSimple2DCell
vicsekOrderParameter(Dscalar2 &vParallel, Dscalar2 &vPerpendicular)Simple2DActiveCellinline
vicsekOrderParameterDirector(Dscalar2 &vParallel, Dscalar2 &vPerpendicular)Simple2DActiveCellinline
voroCurSimple2DCellprotected
voroLastNextSimple2DCellprotected
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